# Self-Assessment: Module 5 Maryam Momeni

**URL:** <http://staging.stemaway.com/t/self-assessment-module-5-maryam-momeni/9199>\
**Category:** R Shiny Transcriptomics App 2021\
**Created:** [August 15, 2021, 6:50pm UTC](http://staging.stemaway.com/t/self-assessment-module-5-maryam-momeni/9199 "2021-08-15T18:50:27Z")\
**Posts on this page:** 1\
**Page:** 1

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**Author:** ![Maryam](https://d3rzmptxz7fqzy.cloudfront.net/user_avatar/staging.stemaway.com/maryam/32/4491_2.png) [@Maryam](http://staging.stemaway.com/u/Maryam)\
**Post date:** [August 15, 2021, 6:50pm UTC](http://staging.stemaway.com/t/self-assessment-module-5-maryam-momeni/9199/1 "2021-08-15T18:50:27Z")

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**Module 5:**

**Technical area:**

- Implementing Gene ontology for colorectal cancer and plotting
- Implementing KEGG pathways enrichment analysis for up-regulated genes of colorectal cancer and showing that in barplot and dot plot
- Plotting Gene-concept network for KEGG pathways
- Plotting Gene-concept network for TFs
- Implementing GSEA

**Soft skills:**

- Finding a study design and suitable datasets for the case study of R Shiny app’s article
- Troubleshooting the errors that I was being got from implementing the codes

**Tools:**

- Enrichplot
- org.Hs.eg.db
- msigdbrmagrittr
- clusterProfiler
- enrichplot
- tidyr
- clusterProfiler

**Achievements:**

- Obtaining the pathways involved in colorectal cancer
- Obtaining GSEA plot

**Hurdles:**

I was getting an error while wanted to perform Gene-concept-analysis. So I searched about the problem and find the answer in one of the forums. I updated the clusterProfiler package and the problem was fixed.