• Export the up-regulated genes from R
• Further analysis on up-regulated genes
• Analysis of the differentially expressed genes, enriched pathways by them, analysis of PPI networks, survival analysis, exploration about pathways.
• Also, we are writing a case study for the R Shiny app’s (sMAP) article. I am improving my scientific reporting skills as well as teamwork skills.
• I performed an Enrichment analysis by Enrichr and obtained all the pathways, gene ontologies, TFs, drugs, and diseases that were enriched for the up-regulated genes.
• Then I imported all that genes to Metascape and compared the pathways that were enriched in Metascape and Enrichr with each other.
• After that, I did a survival analysis for five genes and implemented some further analysis like normal/cancer comparison and analysis of genes by the stage of cancer by GEPIA